Package: multinomialLogitMix 1.1

multinomialLogitMix: Clustering Multinomial Count Data under the Presence of Covariates

Methods for model-based clustering of multinomial counts under the presence of covariates using mixtures of multinomial logit models, as implemented in Papastamoulis (2023) <doi:10.1007/s11634-023-00547-5>. These models are estimated under a frequentist as well as a Bayesian setup using the Expectation-Maximization algorithm and Markov chain Monte Carlo sampling (MCMC), respectively. The (unknown) number of clusters is selected according to the Integrated Completed Likelihood criterion (for the frequentist model), and estimating the number of non-empty components using overfitting mixture models after imposing suitable sparse prior assumptions on the mixing proportions (in the Bayesian case), see Rousseau and Mengersen (2011) <doi:10.1111/j.1467-9868.2011.00781.x>. In the latter case, various MCMC chains run in parallel and are allowed to switch states. The final MCMC output is suitably post-processed in order to undo label switching using the Equivalence Classes Representatives (ECR) algorithm, as described in Papastamoulis (2016) <doi:10.18637/jss.v069.c01>.

Authors:Panagiotis Papastamoulis [aut, cre]

multinomialLogitMix_1.1.tar.gz
multinomialLogitMix_1.1.zip(r-4.7)multinomialLogitMix_1.1.zip(r-4.6)multinomialLogitMix_1.1.zip(r-4.5)
multinomialLogitMix_1.1.tgz(r-4.6-x86_64)multinomialLogitMix_1.1.tgz(r-4.6-arm64)multinomialLogitMix_1.1.tgz(r-4.5-x86_64)multinomialLogitMix_1.1.tgz(r-4.5-arm64)
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multinomialLogitMix_1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION
card.svg |card.png
multinomialLogitMix/json (API)

# Install 'multinomialLogitMix' in R:
install.packages('multinomialLogitMix', repos = c('https://mqbssppe.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

cppopenmp

1.00 score 243 downloads 18 exports 31 dependencies

Last updated from:91a3e35ac2. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK125
linux-devel-x86_64OK134
source / vignettesOK164
linux-release-arm64OK132
linux-release-x86_64OK129
macos-release-arm64OK115
macos-release-x86_64OK199
macos-oldrel-arm64OK154
macos-oldrel-x86_64OK221
windows-develOK132
windows-releaseOK122
windows-oldrelOK145
wasm-releaseOK100

Exports:dealWithLabelSwitchingexpected_complete_LLgibbs_mala_samplergibbs_mala_sampler_pptlog_dirichlet_pdflog_mix_prior_derivativelog_prior_mixmala_proposalmala_proposal_cppmix_mnm_logisticmixLoglikelihood_GLMmultinomial_logistic_EMmultinomialLogitMixmyDirichletnewton_raphson_mstepshakeEM_GLMsimulate_multinomial_datasplitEM_GLM

Dependencies:clicodacodetoolscombinatcpp11doParallelfarverforeachggplot2gluegtableisobanditeratorslabel.switchinglabelinglatticelifecyclelpSolveMASSmatrixStatsmvtnormR6RColorBrewerRcppRcppArmadillorlangS7scalesvctrsviridisLitewithr