Package: bayesCureRateModel 1.6
bayesCureRateModel: Bayesian Cure Rate Modeling for Time-to-Event Data
A fully Bayesian approach in order to estimate a general family of cure rate models under the presence of covariates, see Papastamoulis and Milienos (2024) <doi:10.1007/s11749-024-00942-w> and Papastamoulis and Milienos (2024b) <doi:10.48550/arXiv.2409.10221>. The promotion time can be modelled (a) parametrically using typical distributional assumptions for time to event data (including the Weibull, Exponential, Gompertz, log-Logistic distributions), or (b) semiparametrically using finite mixtures of distributions. In both cases, user-defined families of distributions are allowed under some specific requirements. Posterior inference is carried out by constructing a Metropolis-coupled Markov chain Monte Carlo (MCMC) sampler, which combines Gibbs sampling for the latent cure indicators and Metropolis-Hastings steps with Langevin diffusion dynamics for parameter updates. The main MCMC algorithm is embedded within a parallel tempering scheme by considering heated versions of the target posterior distribution.
Authors:
bayesCureRateModel_1.6.tar.gz
bayesCureRateModel_1.6.zip(r-4.7)bayesCureRateModel_1.6.zip(r-4.6)bayesCureRateModel_1.6.zip(r-4.5)
bayesCureRateModel_1.6.tgz(r-4.6-x86_64)bayesCureRateModel_1.6.tgz(r-4.6-arm64)bayesCureRateModel_1.6.tgz(r-4.5-x86_64)bayesCureRateModel_1.6.tgz(r-4.5-arm64)
bayesCureRateModel_1.6.tar.gz(r-4.7-arm64)bayesCureRateModel_1.6.tar.gz(r-4.7-x86_64)bayesCureRateModel_1.6.tar.gz(r-4.6-arm64)bayesCureRateModel_1.6.tar.gz(r-4.6-x86_64)
bayesCureRateModel_1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
bayesCureRateModel/json (API)
| # Install 'bayesCureRateModel' in R: |
| install.packages('bayesCureRateModel', repos = c('https://mqbssppe.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mqbssppe/bayesian_cure_rate_model/issues
- marriage_dataset - Marriage data
- sim_mix_data - Simulated dataset
Last updated from:f06e7de9e1. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 162 | ||
| linux-devel-x86_64 | OK | 178 | ||
| source / vignettes | OK | 207 | ||
| linux-release-arm64 | OK | 166 | ||
| linux-release-x86_64 | OK | 173 | ||
| macos-release-arm64 | OK | 145 | ||
| macos-release-x86_64 | OK | 336 | ||
| macos-oldrel-arm64 | OK | 117 | ||
| macos-oldrel-x86_64 | OK | 393 | ||
| windows-devel | OK | 150 | ||
| windows-release | OK | 140 | ||
| windows-oldrel | OK | 180 | ||
| wasm-release | OK | 125 |
Exports:complete_log_likelihood_generalcompute_fdr_tprcure_rate_MC3cure_rate_mcmclog_dagumlog_gammalog_gamma_mixturelog_gompertzlog_logLogisticlog_lomaxlog_user_mixturelog_weibulllogLik.bayesCureModelplot.bayesCureModelplot.predict_bayesCureModelpredict.bayesCureModelprint.bayesCureModelprint.predict_bayesCureModelprint.summary_bayesCureModelresiduals.bayesCureModelsummary.bayesCureModelsummary.predict_bayesCureModelSurv
Dependencies:assertthatbbmlebdsmatrixcalculusclicodacodetoolscpp11data.tabledeSolvedoParalleldplyrfarverfastGHQuadflexsurvforeachgenericsggplot2gluegtableHDIntervalisobanditeratorslabelinglatticelifecyclelsodamagrittrMASSMatrixmclustmgcvmstatemuhazmvtnormnlmenumDerivpillarpkgconfigpurrrquadprogR6RColorBrewerRcppRcppArmadillorlangrstpm2S7scalesstatmodstringistringrsurvivaltibbletidyrtidyselectutf8vctrsVGAMviridisLitewithr
