Package: bayesCureRateModel 1.6

bayesCureRateModel: Bayesian Cure Rate Modeling for Time-to-Event Data

A fully Bayesian approach in order to estimate a general family of cure rate models under the presence of covariates, see Papastamoulis and Milienos (2024) <doi:10.1007/s11749-024-00942-w> and Papastamoulis and Milienos (2024b) <doi:10.48550/arXiv.2409.10221>. The promotion time can be modelled (a) parametrically using typical distributional assumptions for time to event data (including the Weibull, Exponential, Gompertz, log-Logistic distributions), or (b) semiparametrically using finite mixtures of distributions. In both cases, user-defined families of distributions are allowed under some specific requirements. Posterior inference is carried out by constructing a Metropolis-coupled Markov chain Monte Carlo (MCMC) sampler, which combines Gibbs sampling for the latent cure indicators and Metropolis-Hastings steps with Langevin diffusion dynamics for parameter updates. The main MCMC algorithm is embedded within a parallel tempering scheme by considering heated versions of the target posterior distribution.

Authors:Panagiotis Papastamoulis [aut, cre], Fotios Milienos [aut]

bayesCureRateModel_1.6.tar.gz
bayesCureRateModel_1.6.zip(r-4.7)bayesCureRateModel_1.6.zip(r-4.6)bayesCureRateModel_1.6.zip(r-4.5)
bayesCureRateModel_1.6.tgz(r-4.6-x86_64)bayesCureRateModel_1.6.tgz(r-4.6-arm64)bayesCureRateModel_1.6.tgz(r-4.5-x86_64)bayesCureRateModel_1.6.tgz(r-4.5-arm64)
bayesCureRateModel_1.6.tar.gz(r-4.7-arm64)bayesCureRateModel_1.6.tar.gz(r-4.7-x86_64)bayesCureRateModel_1.6.tar.gz(r-4.6-arm64)bayesCureRateModel_1.6.tar.gz(r-4.6-x86_64)
bayesCureRateModel_1.6.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
bayesCureRateModel/json (API)

# Install 'bayesCureRateModel' in R:
install.packages('bayesCureRateModel', repos = c('https://mqbssppe.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/mqbssppe/bayesian_cure_rate_model/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

openblascpp

1.48 score 1 scripts 579 downloads 23 exports 61 dependencies

Last updated from:f06e7de9e1. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK162
linux-devel-x86_64OK178
source / vignettesOK207
linux-release-arm64OK166
linux-release-x86_64OK173
macos-release-arm64OK145
macos-release-x86_64OK336
macos-oldrel-arm64OK117
macos-oldrel-x86_64OK393
windows-develOK150
windows-releaseOK140
windows-oldrelOK180
wasm-releaseOK125

Exports:complete_log_likelihood_generalcompute_fdr_tprcure_rate_MC3cure_rate_mcmclog_dagumlog_gammalog_gamma_mixturelog_gompertzlog_logLogisticlog_lomaxlog_user_mixturelog_weibulllogLik.bayesCureModelplot.bayesCureModelplot.predict_bayesCureModelpredict.bayesCureModelprint.bayesCureModelprint.predict_bayesCureModelprint.summary_bayesCureModelresiduals.bayesCureModelsummary.bayesCureModelsummary.predict_bayesCureModelSurv

Dependencies:assertthatbbmlebdsmatrixcalculusclicodacodetoolscpp11data.tabledeSolvedoParalleldplyrfarverfastGHQuadflexsurvforeachgenericsggplot2gluegtableHDIntervalisobanditeratorslabelinglatticelifecyclelsodamagrittrMASSMatrixmclustmgcvmstatemuhazmvtnormnlmenumDerivpillarpkgconfigpurrrquadprogR6RColorBrewerRcppRcppArmadillorlangrstpm2S7scalesstatmodstringistringrsurvivaltibbletidyrtidyselectutf8vctrsVGAMviridisLitewithr